Genome Sequencing Using Graph Theory Approach

Whole Genome Sequencing: An Efficient Approach in Food Safety Management System

A Graph-Based Clustering Approach to Identify Cell Populations in Single-Cell RNA Sequencing Data

Introduction: The emergence of single-cell RNA-sequencing (scRNA-seq) technology has provided new information about the structure of cells, and provided data with very high resolution of the expression of different genes for each cell at a single time. One of the main uses of scRNA-seq is data clustering based on expressed genes, which sometimes leads to the detection of rare cell populations. ...

A Graph-Based Clustering Approach to Identify Cell Populations in Single-Cell RNA Sequencing Data

Introduction: The emergence of single-cell RNA-sequencing (scRNA-seq) technology has provided new information about the structure of cells, and provided data with very high resolution of the expression of different genes for each cell at a single time. One of the main uses of scRNA-seq is data clustering based on expressed genes, which sometimes leads to the detection of rare cell populations. ...

Graph Theory Based Approach For Image Segmentation Using Wavelet Transform

This paper presents the image segmentation approach based on graph theory and threshold. Amongst the various segmentation approaches, the graph theoretic approaches in image segmentation make the formulation of the problem more flexible and the computation more resourceful. The problem is modeled in terms of partitioning a graph into several sub-graphs; such that each of them represents a meani...

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.

Motivation Sequencing studies on non-model organisms often interrogate both genomes and transcriptomes with massive amounts of short sequences. Such studies require de novo analysis tools and techniques, when the species and closely related species lack high quality reference resources. For certain applications such as de novo annotation, information on putative exons and alternative splicing m...